Portfolio project using github pages.
Biotechnologitst | Bioinformatician | Molecular Biologist
I am a passionate biotechnologist, molecular biologist, and bioinformatician with strong enthusiasm for bridging lab science and computational analysis. My work involves applying molecular tools, exploring genetic mechanisms, and using data-driven approaches to solve challenges in health, agriculture, and biotechnology.
Cholera Epidemiology Project
Designed a cholera epidemiology surveillance dashboard using R to track and visualize cholera outbreaks, enhancing public health response strategies.
Skills & Tools: R shiny, Epidemiology, Data wrangling and visualization
Phylogenetic Analysis and Comparative Genomics
Conducted comprehensive phylogenetic analysis and comparative genomics of Puccinia graminis f.s.p isolates, providing insights into their evolutionary relationships and pathogenicity.
Tools: Bash, FastQC, MultiQC, Fastp, Busco, Quast, Augustus, EggNog Mapper, Orthofinder, MAFFT, iTol, Fasttree, MuMmer, Snippy
MRSA Genome Assembly
Stapled a complete genome assembly of Methicillin-resistant Staphylococcus aureus (MRSA) using Illumina sequencing data, enhancing understanding of its genetic makeup and resistance mechanisms.
Tools: FastQC, Fastp, Spades, Quast
MTB Variant Calling Pipeline
Developed a robust NGS variant calling pipeline for Mycobacterium tuberculosis (MTB) using bash scripting, automating the analysis of sequencing data to identify genetic variants associated with drug resistance.
Tools: FastQC, MultiQC, Fastp, BWA, Samtools, freebayes
To view more of my projects, please visit my GitHub profile.
Bioinformatics: Genome Assembly, Variant Calling, Phylogenetics, Comparative Genomics, Molecular Docking, NGS Data Analysis, Sequence Alignment, Data Visualization
Programming Languages: Python, R, Bash
Laboratory Techniques: PCR, Gel Electrophoresis, DNA/RNA Extraction, Spectrophotometry, Microscopy
Tools & Software: Bioconductor, Galaxy, MEGA, AutoDock Vina , PyMOL, FastQC, Trimmomatic, BWA, SAMtools, GATK, IGV, RStudio, Git/GitHub,velvet, SPAdes, Prokka, BLAST, ClustalW, MAFFT,Orthofinder, IQ-TREE, FigTree, VMD, Discovery Studio
Soft Skills: Problem-Solving, Critical Thinking, Communication, Teamwork, Adaptability, Time Management
I am always open to connecting with fellow researchers, professionals, and enthusiasts in the fields of biotechnology, molecular biology, and bioinformatics. Reach out to me via email, phone, or social media for collaborations, discussions, or opportunities.
Eldoret , Kenya.